Selected Publications (First/co-first author research papers)

1. Xushen Xiong#, Benjamin T. James#, Carles A. Boix#, Yongjin Park, Kyriaki Galani, Na Sun, Lei Hou, Li-Lun Ho, Julio Mantero, Hansruedi Mathys, David A. Bennett, Li-Huei Tsai, Manolis Kellis. Single-cell epigenomic dissection of Alzheimer's disease pinpoints causal genetic variants and reveals epigenome erosion. Cell (Accepted)

2. Lei Hou#, Xushen Xiong#, Yongjin Park, Carles Boix, Benjamin James, Na Sun, Liang He, Aman Patel, Zhizhuo Zhang, Benoit Molinie, Nicholas Van Wittenberghe, Scott Steelman, Chad Nusbaum, François Aguet, Kristin G. Ardlie, Manolis Kellis. Multi-tissue epigenomic variation atlas across 387 GTEx samples interprets disease genetics in brain, heart, muscle, and lung. Nature Genetics (Accepted)

3. Xushen Xiong#, Lei Hou#, Yongjin Park, Benoit Molinie, GTEx Consortium, Richard I. Gregory, Manolis Kellis. Genetic drivers of m⁶A methylation in human brain, lung, heart and muscle. Nature Genetics. (2021)

4. Yanying Wang#, Jing Wang#, Xiaoyu Li#, Xushen Xiong#, Jianyi Wang, Ziheng Zhou, Xiaoxiao Zhu, Dan Dominissini, Yang Gu, Lei He, Yong Tian, Chengqi Yi, Zusen Fan. N1-methyladenosine methylation in tRNA drives liver tumourigenesis by regulating cholesterol metabolism. Nature Communications. (2021)

5. Xiong X#, Li X#, Wang K, Yi C. Perspectives on topology of the human m¹A methylome at single nucleotide resolution. RNA. (2018)

6. Li X#, Xiong X#, Zhang M#, Wang K#, Chen Y#, Zhou J, Mao Y, Lv J, Yi D, Chen X, Wang C, Qian SB, Yi C. Base-resolution mapping reveals distinct m¹A methylome in nuclear- and mitochondrial-encoded transcripts. Molecular Cell. (2017) (Selected as the “Best of Molecular Cell Tech 2017”)

7. Li X#, Xiong X#, Wang K, Wang L, Shu X, Ma S & Yi C. Transcriptome-wide mapping reveals reversible and dynamic N¹-methyladenosine methylome. Nature Chemical Biology. (2016) (Selected as the “Method of the year” by Nature Methods)

8. Shu X#, Xiong X#, Song J, He C, Yi C. Base-Resolution Analysis of Cisplatin–DNA Adducts at the Genome Scale. Angew Chem Int Ed Engl. (2016) (Selected as the “Very Important Paper” by the journal)
 
Other publications (Contributing-author papers or Review papers)

9. Liu J, Li K, Cai J, Zhang M, Zhang X, Xiong X, Meng H, Xu X, Huang Z, Peng J, Fan J, Yi C.
Landscape and Regulation of m6A and m6Am Methylome across Human and Mouse Tissues. Molecular Cell. (2020)

10. Xiong X, Li X, Yi C. N¹-methyladenosine methylome in messenger RNA and non-coding RNA. Current Opinion in Chemical Biology. Review. (2018)

11. Xiong X, Yi C & Peng J. Epitranscriptomics: Toward A Better Understanding of RNA Modifications. Genomics Proteomics Bioinformatics. Review. (2017)

12. Li X, Xiong X & Yi C. Epitranscriptome sequencing technologies: decoding RNA modifications. Nature Methods. Review. (2016)